Yudan Liu

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Research Description
Charge transfer dynamics via mapping methods and generalized quantum master equation

Prof. Eitan Geva, Chemistry

Dominika Zgid

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Dominika Zgid is an Associate Professor in the Department of Chemistry and in the Department of Physics. Her group bridges the fields of chemistry, physics and material sciences seeking to explain and predict the electronic movement in finite molecular systems and infinite crystalline materials. They develop new theoretical approaches that will advance current theoretical tools in chemistry that can be applied to a variety of industrial applications.

Paul Zimmerman

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From elementary chemical reactions to exciton dynamics in solar cells, chemistry is a particularly rich field for atomistic simulation. Research in the Zimmerman group develops and employs a broad spectrum of computational techniques to chemical problems. Special emphasis is taken on creating new, practical computational methods for application to problems that are considered out-of-reach to standard simulation methodologies. For instance, automated prediction of chemical reactions has long been considered impossible using quantum chemical simulation. To break this limitation, the Zimmerman group is creating new techniques for locating reaction paths and products of catalytic reactions, with the goal of predicting the outcome of reactions prior to experiment. These tools use a combination of chemical intuition, applied mathematics, and massively parallel computation to achieve an impressive level of automation and predictive value.

Automatically generated growth pattern of a chemical reaction network involving a hydrogen storage material, NH3BH3.

Automatically generated growth pattern of a chemical reaction network involving a hydrogen storage material, NH3BH3.

Charles Brooks

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Charles L. Brooks III is the Warner-Lambert/Parke-Davis Professor of Chemistry and a Professor of Biophysics. He is affiliated with the department of Chemistry, Biophysics Program, program in Applied Physics, Molecular Biophysics Training Program (Director), program in Chemical Biology, Bioinformatics Graduate Program, Center for Computational Medicine and Bioinformatics and the Medicinal Chemistry Interdepartmental Graduate Program. The research in the group of Charles L. Brooks III is focused on the application of statistical mechanics, quantum chemistry and computational methods to chemically and physically oriented problems in biology. The group develops and applies computational models to studies of the dynamics of proteins, nucleic acids and their complexes, including virus structure and assembly. They specifically develop novel computational methods for the inclusion of pH effects in modeling biological systems. Significant focus is in the development of a large, world-wide distributed software package for molecular simulations, CHARMM. Efforts are ongoing to explore new means of parallel and accelerated computation utilizing scalable parallel algorithms for molecular dynamics and integrated CPU/GPU computational models.

Eitan Geva

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Eitan Geva is a Professor of Chemistry. Modern computational chemistry strives to provide an atomistically detailed dynamical description of fundamental chemical processes. The strategy for reaching this goal generally follows a two-step program. In the first step, electronic structure calculations are used to obtain the force fields that the nuclei are subject to. In the second step, molecular dynamics simulations are used to describe the motion of the nuclei. The first step is always based on quantum mechanics, in the light of the pronounced quantum nature of the electrons. However, the second step is most often based on classical mechanics. Indeed, classical molecular dynamics simulations are rroutinely used nowadays for describing the dynamics of complex chemical systems that involve tens of thousands of atoms. However, there are many important situations where classical mechanics cannot be used for describing the dynamics. Our research targets the most chemically relevant examples of such processes.
  1. Vibrational end electronic relaxation. The pathways of intramolecular energy redistribution within molecules and intermolecular energy transfer between molecules, which dictate chemical reactivity, are governed by the rates of these processes. The pronounced quantum nature of these processes is attributed to the large gap between vibrational and electronic energy levels.
  2. Proton and electron transfer reactions. The elementary steps of many complex chemical processes are based on such reactions. Their pronounced quantum nature is attributed to the light mass of protons and electrons, which often give rise to quantum tunneling and zero-point energy effects.
  3. Nonadiabatic dynamics. Such dynamics underlie photochemistry and nonlinear spectroscopy is quantum in nature since it involves simultaneous motion on several potential surfaces that correspond to different electronic or vibrational states.

The challenge involved in simulating the quantum molecular dynamics of such systems has to do with the fact that the computational effort involved in solving the time-dependent Schrodinger equation is exponentially larger than that involved in Newton’s equations. As a result, a numerically exact solution of the Schrondinger equation is not feasible for a system that consists of more than a few atoms. The main research thrust of the Geva group is aimed at developing rigorous and accurate mixed quantum-classical, quasi-classical and semiclassical methods that would make it possible to simulate equilibrium and nonequilibrium quantum dynamics of systems that consist of hundreds of atoms and molecules. We put emphasis on applications to experimentally-relevant disordered complex condensed phase systems such as molecular liquids, which serve as hosts for many important chemical processes. We also specialize in modeling and analyzing different types of time resolved electronic and vibrational spectra that are used to probe molecular dynamics in those systems, often in collaboration with experimental groups.